metagenomics

ESA Planetary Protection Workshop
Speaking at the ESA Planetary Protection Workshop on Assessing metagenomic methods for their inclusion in ESA standards.
3. Oct 2023 00:00 — 4. Oct 2023 23:59 ESTEC, Noordwijk, The Netherlands
Silas Kieser
Project
Talk at the Lausanne Comp Bio Meeting
Talk title: Decoding the Microbial Universe: Large-Scale Metagenomics at the Sub-Species Level
14. Jun 2023 10:00 — 12:30 University of Lausanne
Silas Kieser
Project
Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart
Mouse is the most used model for studying the impact of microbiota on its host, but the rep- ertoire of species from the mouse gut …
Silas Kieser, Evgeny M. Zdobnov, Mirko Trajkovski
PDF Code Dataset Project DOI
Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Metagenomics studies provide valuable insight into the composition and function of microbial populations from diverse environments; …
Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue
Code Project DOI
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
Bangladeshi children with acute diarrhoea show faecal microbiomes with increased Streptococcus abundance, irrespective of diarrhoea aetiology
We report streptococcal dysbiosis in acute diarrhoea irrespective of aetiology. Compared with 20 healthy local controls, 71 Bangladeshi …
Silas Kieser, Shafiqul A. Sarker, Olga Sakwinska, FrancisFoata, Shamima Sultana, Zeenat Khan, Shoheb Islam, Nadine Porta, Séverine Combremont, Bertrand Betrisey, Coralie Fournier, Aline Charpagne, Patrick Descombes, Annick Mercenier, Bernard Berger, Brüssow Harald
Project DOI
Bangladeshi children with acute diarrhoea show faecal microbiomes with increased Streptococcus abundance, irrespective of diarrhoea aetiology
Antibiotic Treatment Leads to Fecal Escherichia coli and Coliphage Expansion in Severely Malnourished Diarrhea Patients
Malnutrition predisposes to diarrhea and diarrhea adversely affects the nutritional status creating a vicious cycle. The role of the …
Silas Kieser, Shafiqul A. Sarker, Bernard Berger, Shamima Sultana, Mohammed J. Chisti, Shoeb B. Islam, Francis Foata, Nadine Porta, Bertrand Betrisey, Coralie Fournier, Patrick Descombes, Annick Mercenier, Olga Sakwinska, Harald Brüssow
Project DOI
Antibiotic Treatment Leads to Fecal Escherichia coli and Coliphage Expansion in Severely Malnourished Diarrhea Patients
Internship at Nestlé research
This Internship allowed me to learn from experts about children gut microbiota and to realize my first publications.