Publications

Silas Kieser, Evgeny M. Zdobnov, Mirko Trajkovski (2022). Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart. PLOS Comp. Bio..

PDF Code Dataset Project DOI

Chevalier Claire, Silas Kieser, Melis Çolakoğlu, Noushin Hadadi, Julia Brun, Dorothée Rigo, Nicolas Suárez-Zamorano, Martina Spiljar, Salvatore Fabbiano, Björn Busse, Julijana Ivanišević, Andrew Macpherson, Nicolas Bonnet, Mirko Trajkovski (2020). Warmth Prevents Bone Loss Through the Gut Microbiota. In Cell Metabolism.

Video DOI

Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue (2020). ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data. In BMC Bioinformatics.

Code Project DOI

Silas Kieser, Shafiqul A. Sarker, Olga Sakwinska, FrancisFoata, Shamima Sultana, Zeenat Khan, Shoheb Islam, Nadine Porta, Séverine Combremont, Bertrand Betrisey, Coralie Fournier, Aline Charpagne, Patrick Descombes, Annick Mercenier, Bernard Berger, Brüssow Harald (2018). Bangladeshi children with acute diarrhoea show faecal microbiomes with increased Streptococcus abundance, irrespective of diarrhoea aetiology. In Environmental Microbiology.

Project DOI

Silas Kieser, Shafiqul A. Sarker, Bernard Berger, Shamima Sultana, Mohammed J. Chisti, Shoeb B. Islam, Francis Foata, Nadine Porta, Bertrand Betrisey, Coralie Fournier, Patrick Descombes, Annick Mercenier, Olga Sakwinska, Harald Brüssow (2017). Antibiotic Treatment Leads to Fecal Escherichia coli and Coliphage Expansion in Severely Malnourished Diarrhea Patients. In CMGH.

Project DOI