Posts

Connecting to a high-performance computing (HPC) server might seem daunting at first. However, with the right tools and guidance, it can be a straightforward process. This blog post aims to demystify the connection process, making it accessible to both novices and seasoned users.

Note : Ce blog est adapté d’une présentation donnée aux Big Questions 2022. Mon point de vue a évolué depuis sur certains détails. Table of Contents 1. La religion fournit le cadre conceptuel dans lequel la science peut s’épanouir.

Recent years we saw an explosion of genomes beeing assembled from megagenomes. Most of the studies assemble and bin each sample individually, because this is the most scalable. Maybe it’s time to think if this approach is really the best?

Quarto Quarto and Hugo Quarto Quarto is the successor to R-markdown. Drawing heavily from tools like Pandoc, it not only supports R but also allows the inclusion and execution of Python code, even through a Jupyter interface.

Metagenomics has revoluzionized microbiology. This sequencing technology enables researchers to gain insight into the composition and functional potential of a microbial community in situ. Even though it is called metagenomics, the sequenced reads were not analyzed on a genome level due to technical limitations, especially the lack of reference genomes for many microbiomes.

I finished writing my PhD Thesis with the title: Computational approaches for a healthier microbiome You can peak inside here. I made a small graphic how many words I wrote over time.