Connecting to a high-performance computing (HPC) server might seem daunting at first. However, with the right tools and guidance, it can be a straightforward process. This blog post aims to demystify the connection process, making it accessible to both novices and seasoned users.

Note : Ce blog est adapté d’une présentation donnée aux Big Questions 2022. Mon point de vue a évolué depuis sur certains détails. Table of Contents 1. La religion fournit le cadre conceptuel dans lequel la science peut s’épanouir.

Recent years we saw an explosion of genomes beeing assembled from megagenomes. Most of the studies assemble and bin each sample individually, because this is the most scalable. Maybe it’s time to think if this approach is really the best?

Quarto Quarto and Hugo Quarto Quarto is the successor to R-markdown. Drawing heavily from tools like Pandoc, it not only supports R but also allows the inclusion and execution of Python code, even through a Jupyter interface.

Metagenomics has revoluzionized microbiology. This sequencing technology enables researchers to gain insight into the composition and functional potential of a microbial community in situ. Even though it is called metagenomics, the sequenced reads were not analyzed on a genome level due to technical limitations, especially the lack of reference genomes for many microbiomes.

Speaking at the ESA Planetary Protection Workshop on Assessing metagenomic methods for their inclusion in ESA standards.

A Tutorial about Metagenome-Atlas at the ISMB/ECCB conference

Talk title: Decoding the Microbial Universe: Large-Scale Metagenomics at the Sub-Species Level

Content In preparation. Already have a look at the course from last year

Prof. Samuel Flores, dean of Students for MedBioInfo, the Swedish National Research School in Medical Bioinformatics, invited me to give a talk on metagenomics. This was a fantastic opportunity to discuss how metagenomics can be used in a variety of research projects.

Mouse is the most used model for studying the impact of microbiota on its host, but the rep- ertoire of species from the mouse gut …

Warmth exposure (34°C) protects against ovariectomy-induced bone loss in adult female, as well as in young male mice. Transplantation of the warm-adapted microbiota phenocopies the warmth-induced bone effects.

Metagenomics studies provide valuable insight into the composition and function of microbial populations from diverse environments; …

We report streptococcal dysbiosis in acute diarrhoea irrespective of aetiology. Compared with 20 healthy local controls, 71 Bangladeshi …

Malnutrition predisposes to diarrhea and diarrhea adversely affects the nutritional status creating a vicious cycle. The role of the …